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Non-coding RNA studies
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Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning |
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Ian R Henderson, Xiaoyu Zhang, Cheng Lu, Lianna Johnson, Blake C Meyers, Pamela J Green & Steven E Jacobsen Nature Genetics 2006 Jun;38(6):721-5 Epub 2006 May 14 |
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A germline-specific class of small RNAs binds mammalian Piwi proteins |
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Angélique Girard, Ravi Sachidanandam, Gregory J. Hannon and Michelle A. Carmell Nature. 2006 Jul 13;442(7099):199-202. Epub 2006 Jun 4 |
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Characterization of the piRNA Complex from Rat Testes |
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Nelson C. Lau, Anita G. Seto, Jinkuk Kim, Satomi Kuramochi-Miyagawa, Toru Nakano, David P.Bartel, Robert E. Kingston Science 21 July 2006: Vol. 313. no. 5785, pp. 363 – 367 DOI: 10.1126/science.1130164 |
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Marek's Disease Virus Encodes MicroRNAs That Map to meq and the Latency-Associated |
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Joan Burnside, Erin Bernberg, Amy Anderson, Cheng Lu, Blake C. Meyers, Pamela J. Green, Neeta Jain, Grace Isaacs, and Robin W. Morgan Journal of Virology, September 2006, p. 8778-8786, Vol. 80, No. 17 |
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MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant |
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Cheng Lu, Karthik Kulkarni, Frédéric F. Souret, Ramesh MuthuValliappan, Shivakundan Singh Tej, R. Scott Poethig, Ian R. Henderson, Steven E. Jacobsen, Wenzhong Wang, Pamela J. Green and Blake C. Meyers Genome Research, Published online before print September 5, 2006; DOI: 10.1101/gr.5530106 |
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Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation |
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Yijun Qi, Xingyue He, Xiu-Jie Wang, Oleksiy Kohany, Jerzy Jurka & Gregory J. Hannon Nature, Published online before print September 24, 2006 doi:10.1038/nature05198 |
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A Two-Hit Trigger for siRNA Biogenesis in Plants |
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Michael J. Axtell, Calvin Jan, Ramya Rajagopalan, and David P. Bartel Cell 127, 565¨C577, November 3, 2006 |
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Diversity of microRNAs in Human and Chimpanzee Brain |
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Eugene Berezikov, Fritz Thuemmler, Linda W van Laake, Ivanela Kondova, Ronald Bontrop, Edwin Cuppen and Ronald H A Plasterk Nature Genetics, Published Online 29 October 2006; doi:10.1038/ng1914 |
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Distinct Populations of Primary and Secondary Effectors During RNAi in C. elegans |
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Julia Pak and Andrew Fire Science, Published online 23 November 2006 |
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Large-Scale Sequencing Reveals 21U-RNAs and Additional MicroRNAs and Endogenous siRNAs in C. elegans |
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J. Graham Ruby, Calvin Jan, Christopher Player, Michael J. Axtell, William Lee, Chad Nusbaum, Hui Ge, and David P. Bartel Cell, 127, 1193¨C1207, December 15, 2006 |
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A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana |
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Ramya Rajagopalan, Hervé Vaucheret, Jerry Trejo and David P. Bartel Genes & Dev. 20: 3407-3425, December 15, 2006 |
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High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes |
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Noah Fahlgren, Miya D. Howell, Kristin D. Kasschau, Elisabeth J. Chapman, Christopher M. Sullivan, Jason S. Cumbie, Scott A. Givan, Theresa F. Law, Sarah R. Grant, Jeffery L. Dangl, James C. Carrington PLoS ONE, 1 February 2007, Issue 2, e219 |
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Genome-Wide Profiling and Analysis of Arabidopsis siRNAs |
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Kristin D. Kasschau, Noah Fahlgren, Elisabeth J. Chapman, Christopher M. Sullivan, Jason S. Cumbie, Scott A. Givan, James C. Carrington PLoS Biology, March 2007,Volume 5, Issue 3, e57 |
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Role of RNA polymerase IV in plant small RNA metabolism |
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Xiaoyu Zhang, Ian R. Henderson, Cheng Lu, Pamela J. Green, and Steven E. Jacobsen PNAS, March 13, 2007, vol. 104, no. 11, p. 4536–4541 |
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Genome-Wide Analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 Pathway in Arabidopsis Reveals Dependency on miRNA- and tasiRNA-Directed Targeting |
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Miya D. Howell, Noah Fahlgren, Elisabeth J. Chapman, Jason S. Cumbie, Christopher M. Sullivan, Scott A. Givan, Kristin D. Kasschau, and James C. Carrington Plant Cell published online ahead of print 30 March 2007,cgi/doi/10.1105/tpc.107.050062 |
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Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila |
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Julius Brennecke, Alexei A. Aravin, Alexander Stark, Monica Dus, Manolis Kellis, Ravi Sachidanandam, and Gregory J. Hannon Cell 128, 1089–1103, March 23, 2007 |
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A Role for Piwi and piRNAs in Germ Cell Maintenance and Transposon Silencing in Zebrafish |
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Saskia Houwing, Leonie M. Kamminga, et al. Cell 129, 69–82, April 6, 2007 |
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Developmentally Regulated piRNA Clusters Implicate MILI in Transposon Control |
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Alexei A. Aravin, Ravi Sachidanandam, Angelique Girard, Katalin Fejes-Toth, Gregory J. Hannon Science express,19 April 2007, 10.1126/science.1142612 |
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A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii |
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Tao Zhao, Guanglin Li, Shijun Mi, Shan Li, Gregory J. Hannon, Xiu-Jie Wang and Yijun Qi Genes & Dev |
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Differential Regulation of microRNAs by p53Revealed by Massively Parallel Sequencing |
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Valery Tarasov, Peter Jung, Berlinda Verdoodt, Dmitri Lodygin, Alexey Epanchintsev, Antje Menssen, Gunter Meister, Heiko Hermeking |
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Cloning and characterization of microRNAs from wheat (Triticum aestivum L.) |
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Yingyin Yao (yaoyingyin@163.com) Ganggang Guo (cauguo@gmail.com) Zhongfu Ni (wheat3392@cau.edu.cn) Ramanjulu Sunkar (rsunkar@biochem.okstate.edu) Jinkun Du (jkdu@cau.edu.cn) Jian-Kang Zhu (jian-kang.zhu@ucr.edu) Qixin Sun (qxsun@cau.edu.cn) Genome Biology |
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Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants |
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Abdelali Barakat, Kerr Wall, Jim Leebens-Mack, Yunjiao J. Wang, John E. Carlson and Claude W. dePamphili The Plant Journal |
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Common Functions for Diverse Small RNAs of Land Plants |
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Axtell MJ, Snyder JA, Bartel DP The Plant Cell 19:1750-1769 (2007) |
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Intronic microRNA precursors that bypass Drosha processing |
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Ruby JG, Jan CH, Bartel DP Nature 448, 83-86 (5 July 2007) |
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